PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1254_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 386aa    MW: 42438.2 Da    PI: 6.6521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1254_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00052683031555
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++  +++ L +l+ +      +K + a++L +A+ YI+ Lq
  RrC1254_p2 268 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 303
                 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-9263309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-5263307No hitNo description
Gene3DG3DSA:4.10.280.101.8E-6268308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MNRGVSESSP VLQQLMAAGN PNWWKVSGDM RPPPPFMGHQ QGPLPPQMTH NNNYLRPRMM  60
PTLLPHFLPY PATSSSPSLT NNPNLSSWLE SNDLPPESWS ISQLLLGGLM MGEEERSEIM  120
NHHNHHDGQH HHSFEGKIRL ENWEEQVLSH QQASMGVVDI KQEGIVNNNN GHHHLICSPN  180
SPPNKSCVTT TTTTSLNSID DNNTTNNNNS MFDFSSNHNG LNLSEGRHTP PDLSSECNSL  240
EIGGSTNKKP RLQPSPSSQS TLKVRKEKLG GRIAALHQLV SPFGKTDTAS VLSEAIGYIR  300
FLQSQIELQG DGSCLFPEDP GQLVNDQCMK RRTVSSSTDN QNANEKPKKD LRSRGLCIVP  360
ISCSLQVGSD NGADYWAPAF GSAGFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526290.0AK352629.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-N24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614672.10.0PREDICTED: transcription factor bHLH68-like isoform X3
SwissprotQ8S3D10.0BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2ZTL30.0A0A0D2ZTL3_BRAOL; Uncharacterized protein
STRINGBra010337.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-180bHLH family protein